CHARGE CONTRAST IMAGING OF EXCEPTIONALLY-PRESERVED FOSSILS

Abstract:  Charge contrast images are a variant of secondary electron images acquired by operating a variable pressure scanning electron microscope in low vacuum mode; i.e. a gas is present in the specimen chamber. Spatial variation in the amount of charge that accumulates on the surface of the specimen is expressed as differences in greyscale tone; areas that are charging less are darker in tone. The precise mechanisms by which charge contrast images are generated are not known fully. Various different properties of a mineral may create a charge contrast; electrical conductivity is known to be one potentially important variable. As carbon is highly conductive but typical host lithologies (carbonates, silicates) less so or dielectric, the technique is potentially very suitable for imaging organically preserved fossils such as those from the Solite and Jehol biotas. It can also be applied to Burgess Shale fossils: complex films comprising 'aluminosilicates' with or without carbonaceous remains. Charge contrast images reveal anatomical detail not visible using either optical or other scanning electron microscope-based imaging methods.     

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis

We have established a simple soil-based experimental system that allows a small and sustained restriction of growth of Arabidopsis by low nitrogen (N). Plants were grown in a large volume of a peat–vermiculite mix that contained very low levels of inorganic N. As a control, inorganic N was added in solid form to the peat–vermiculite mix, or plants were grown in conventional nutrient-rich solids. The low N growth regime led to a sustained 20% decrease of the relative growth rate over a period of 2 weeks, resulting in a two- to threefold decrease in biomass in 35- to 40-day-old plants. Plants in the low N regime contained lower levels of nitrate, lower nitrate reductase activity, lower levels of malate, fumarate and other organic acids and slightly higher levels of starch, as expected from published studies of N-limited plants. However, their rosette protein content was unaltered, and total and many individual amino acid levels increased compared with N-replete plants. This metabolic phenotype reveals that Arabidopsis responds adaptively to low N by decreasing the rate of growth, while maintaining the overall protein content, and maintaining or even increasing the levels of many amino acids.     

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

Next‐generation technologies generate an overwhelming amount of gene sequence data. Efficient annotation tools are required to make these data amenable to functional genomics analyses. The Mercator pipeline automatically assigns functional terms to protein or nucleotide sequences. It uses the MapMan ‘BIN’ ontology, which is tailored for functional annotation of plant ‘omics’ data. The classification procedure performs parallel sequence searches against reference databases, compiles the results and computes the most likely MapMan BINs for each query. In the current version, the pipeline relies on manually curated reference classifications originating from the three reference organisms (Arabidopsis, Chlamydomonas, rice), various other plant species that have a reviewed SwissProt annotation, and more than 2000 protein domain and family profiles at InterPro, CDD and KOG. Functional annotations predicted by Mercator achieve accuracies above 90% when benchmarked against manual annotation. In addition to mapping files for direct use in the visualization software MapMan, Mercator provides graphical overview charts, detailed annotation information in a convenient web browser interface and a MapMan‐to‐GO translation table to export results as GO terms. Mercator is available free of charge via http://mapman.gabipd.org/web/guest/app/Mercator .     

Post-juvenile dispersal of Hazel Grouse Bonasa bonasia in an expanding population of the southeastern French Alps

We studied the post-juvenile dispersal of 18 radiotagged juvenile Hazel Grouse Bonasa bonasia (14 males, four females) in an expanding population in the southeastern French Alps between 1998 and 2001. The mean dispersal distances between the capture sites of juveniles in September–October and the centre of the home range in the following spring was 4 km for males (range 0.1–24.9 km) and 2 km for females (range 0.2–5.6 km). The distances recorded for two long-dispersing males (15 and 24.9 km) are greater than those reported to date for Hazel Grouse. Using our radiotracking data, we interpret the pattern of range expansion that has been occurring since the 1950s around our study area. Barriers to dispersal included rocky ground and other alpine habitats above 2000 m and over 1 km wide, but Hazel Grouse did cross open agricultural land at lower elevation. Two patterns of dispersal movements were recognized in juveniles: erratic movements that led to settlement on or near the natal site, and direct movements to a new range relatively far from the natal area. We discuss the adaptive consequences of these different behaviour patterns.     

Regulation of Stable RNA Synthesis in <Emphasis Type="Italic">Escherichia coli</Emphasis>

Comparison of gene dosage and the rate of stable RNA synthesis suggests that cytoplasmic elements are involved in its regulation.     

The Structure of Calf Liver Cytochrome <Emphasis Type="Italic">b</Emphasis><Subscript>5</Subscript> at 2.8 Å Resolution

CYTOCHROME b₅ is a haem-containing protein in the microsomes of liver tissue. It interacts specifically with a flavo-protein, cytochrome b₅ reductase, which catalyses the transfer of electrons from NADH to the haem iron of the cytochrome¹. The microsomal cytochrome b₅ system has been implicated in fatty acid desaturation reactions² and a similar system in erythrocytes may catalyse the reduction of methaemoglobin³. Calf liver cytochrome b₅, solubilized by pancreatic lipase, has a molecular weight of 11,000 and consists of ninety-three amino-acids in the sequence shown in Fig. 1 (refs. 4 and 5). The haem group is non-covalently bound to the protein and can be removed reversibly by acid acetone treatment⁶.     

Lakes of south-western Uganda

The vegetation of Lake Bunyonyi, a high altitude lake in Kigezi, S.W. Uganda, is described. The lake had two distinct plant communities. In the shallow sheltered bays and inflows extensive floating swamps of Cyperus papyrus L. and Cladium janiaicen. se Cranz. existed. On the steep, exposed shores there was only a narrow band of vegetation, dominated by firmly rooted Phragmites australis (Cav.) Steud., usually with papyrus behind. Floating-leaved Potamogeton and Nymphaea sometimes occurred outside the emergent species, and submerged species, including Ceratophyllum demersum L. grew down to 8 m. The pattern of vegetation, and the contribution of floating islands to the distribution of plants in the lake is discussed. Susceptibility to fragmentation, and distribution by wind are thought to be major factors governing the pattern. Oxygen proflies measured at the fringe of swamps indicated that the swamps did not cause appreciable deoxygenation of the water.